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Example 8-1 The vtjacobic Example Program
For the purposes of this example, the examples directory under /opt/IntelTrace/ITC is copied to the
user's home directory and renamed to examples_directory.
The GNU Makefile looks as follows:
CC = mpicc.mpich
F77 = mpif77.mpich
CLINKER = mpicc.mpich
FLINKER = mpif77.mpich
IFLAGS = -I$(VT_ROOT)/include
CFLAGS = -g
FFLAGS = -g
LIBS = -lvtunwind -ldwarf -lnsl -lm -lelf -lpthread
CLDFLAGS = -static-libcxa -L$(VT_ROOT)/lib $(TLIB) -lvtunwind \
-ldwarf -lnsl -lm -lelf -lpthread
FLDFLAGS = -static-libcxa -L$(VT_ROOT)/lib $(TLIB) -lvtunwind \
-ldwarf -lnsl -lm -lelf -lpthread
In the cases where Intel compilers are used, add the -static-libcxa option to the link line. Otherwise
the following type of error will occur at run-time:
$ mpirun.mpich -np 2 ~/examples_directory/vtjacobic
~/examples_directory/vtjacobic:
error while loading shared libraries:
libcprts.so.6: cannot open shared object file:
No such file or directory
MPI Application rank 0 exited before MPI_Init() with status 127
mpirun exits with status: 127
In “The vtjacobic Example Program”, ~/examples_directory/vtjacobic represents the file
specification for the vtjacobic example program.
For more information, see the following Web site:
http://support.intel.com/support/performancetools/c/linux/sb/CS-010097.htm
8.1.2 Running a Program – Intel Trace Collector and HP-MPI
Assuming that you have built your program using the -static-libcxa option, as discussed in “Building
a Program — Intel Trace Collector and HP-MPI”, you can launch the program with the mpirun.mpich
command, as shown in the following example.
Example 8-2 shows how to run the vtjacobic example program discussed in “Building a Program —
Intel Trace Collector and HP-MPI”.
Example 8-2 C Example – Running the vtjacobic Example Program
$ mpirun.mpich -np 2 ~/examples_directory/vtjacobic
~/examples_directory/vtjacobic:100 iterations
in 0.228252 secs (28.712103 MFlops), m=130 n=130 np=2 [0]
Intel Trace Collector INFO: Writing tracefile vtjacobic.stf
in ~/examples_directory/vtjacobic
mpirun exits with status: 0
In Example 8-2, ~/examples_directory/vtjacobic represents the file specification for the vtjacobic
example program.
74 Tuning Applications
- HP XC System Software 1
- User's Guide 1
- Table of Contents 3
- 4 Table of Contents 4
- Table of Contents 5 5
- 6 Table of Contents 6
- List of Figures 7
- List of Examples 11
- About This Document 13
- 14 About This Document 14
- 5 Related information 15
- 16 About This Document 16
- Linux Web Sites 17 17
- 6 Manpages 18
- 7 HP Encourages Your Comments 18
- 1.1 System Architecture 19
- 1.1.4 Node Specialization 20
- 1.1.5 Storage and I/O 21
- 1.1.6 File System 21
- 1.3 User Environment 23
- 1.5 Run-Time Environment 24
- 1.5.3 Standard LSF 25
- 1.5.5 HP-MPI 26
- 2 Using the System 27
- 2.2.1 Introduction 28
- 30 Using the System 30
- 3.1 Overview of Modules 31
- 3.2 Supplied Modulefiles 32
- 3.6 Loading a Modulefile 34
- 3.7 Unloading a Modulefile 34
- 3.9 Modulefile Conflicts 35
- 3.10 Creating a Modulefile 35
- 4 Developing Applications 37
- 4.4 Interrupting a Job 38
- 4.5 Setting Debugging Options 39
- 4.7.1.1 Modulefiles 40
- 4.7.1.2 HP-MPI 40
- 4.7.1.3 OpenMP 40
- 4.7.1.4 Pthreads 40
- 42 Developing Applications 42
- 4.8 Developing Libraries 43
- 44 Developing Applications 44
- 4.8 Developing Libraries 45 45
- 5 Submitting Jobs 47
- 48 Submitting Jobs 48
- 5.3 Submitting a Parallel Job 49
- 50 Submitting Jobs 50
- 52 Submitting Jobs 52
- 54 Submitting Jobs 54
- 56 Submitting Jobs 56
- 6 Debugging Applications 57
- 6.2.1.1 SSH and TotalView 58
- 6.2.1.2 Setting Up TotalView 58
- 60 Debugging Applications 60
- 6.2.1.8 Exiting TotalView 61
- 7 Monitoring Node Activity 63
- 64 Monitoring Node Activity 64
- 66 Monitoring Node Activity 66
- 68 Monitoring Node Activity 68
- 70 Monitoring Node Activity 70
- 8 Tuning Applications 73
- 74 Tuning Applications 74
- 8.2.1 Installation Kit 75
- Running a Program 76
- 9 Using SLURM 79
- 9.3.1.1 The srun Roles 80
- 9.3.1.2 The srun Modes 80
- 9.7 Job Accounting 81
- 9.9 Security 82
- 9.8 Fault Tolerance 82
- 10 Using LSF-HPC 83
- 84 Using LSF-HPC 84
- 10.4 Job Terminology 86
- 10.5.1 Useful Commands 87
- 10.5.3 Preemption 87
- 10.6 Submitting Jobs 88
- SLURM_JOBID=53 89
- SLURM_NPROCS=4 89
- 90 Using LSF-HPC 90
- 92 Using LSF-HPC 92
- 94 Using LSF-HPC 94
- 96 Using LSF-HPC 96
- 98 Using LSF-HPC 98
- 100 Using LSF-HPC 100
- 102 Using LSF-HPC 102
- 11 Advanced Topics 103
- 104 Advanced Topics 104
- 106 Advanced Topics 106
- 11.3.1 Example Procedure 1 107
- 11.3.3 Example Procedure 3 108
- 11.3.2 Example Procedure 2 108
- 11.5.1 Shared File View 109
- 11.5.2 Private File View 109
- 110 Advanced Topics 110
- A Examples 113
- Submit the job: 114
- View the job: 115
- 116 Examples 116
- Exit from the shell: 117
- Show the environment: 117
- Display the script: 118
- Run the job: 118
- Submit the job: 119 119
- View the finished jobs: 120
- View the node state: 120
- View the running job: 121
- View the finished job: 121
- 122 Examples 122
- Glossary 123
- 124 Glossary 124
- 126 Glossary 126
- 130 Index 130
- 132 Index 132
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