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HP XC System Software
1
User's Guide
1
Table of Contents
3
5 Submitting Jobs
4
6 Debugging Applications
5
7 Tuning Applications
5
8 Using SLURM
5
9 Using LSF
5
10 Advanced Topics
6
List of Figures
7
List of Tables
9
List of Examples
11
About This Document
13
HP XC Information
14
For More Information
15
Supplementary Information
15
Related Information
16
Related Linux Web Sites
17
Related MPI Web Sites
17
Related Compiler Web Sites
17
Additional Publications
17
Typographic Conventions
18
HP Encourages Your Comments
18
System Architecture
19
Node Specialization
20
Storage and I/O
20
File System
21
System Interconnect Network
22
User Environment
23
Run-Time Environment
24
Standard LSF
25
2 Using the System
27
Introduction
28
30 Using the System
30
Overview of Modules
31
Supplied Modulefiles
32
Viewing Available Modulefiles
33
Viewing Loaded Modulefiles
33
Loading a Modulefile
33
Unloading a Modulefile
34
Modulefile Conflicts
34
Creating a Modulefile
35
4 Developing Applications
37
Interrupting a Job
38
Setting Debugging Options
39
Modulefiles
40
Standard
41
42 Developing Applications
42
Developing Libraries
43
44 Developing Applications
44
46 Submitting Jobs
46
48 Submitting Jobs
48
Compiling applications
49
HP-MPI User's Guide
49
50 Submitting Jobs
50
Running Preexecution Programs
51
52 Submitting Jobs
52
SSH and TotalView
54
Setting Up TotalView
54
Using TotalView with SLURM
54
Using TotalView with LSF-HPC
55
Setting TotalView Preferences
55
Debugging an Application
55
TotalView process window
56
Exiting TotalView
57
60 Tuning Applications
60
The srun Roles and Modes
64
Job Accounting
65
Fault Tolerance
66
Security
66
Overview of LSF-HPC
68
Using LSF-HPC 69
69
Job Terminology
70
Using LSF-HPC 71
71
Notes on LSF-HPC
72
Using LSF-HPC 73
73
Job Startup and Job Control
74
Preemption
75
Getting Host Load Information
76
Submitting Jobs
77
LSF-SLURM External Scheduler
78
Using LSF-HPC 79
79
80 Using LSF
80
Examining the Status of a Job
81
82 Using LSF
82
Using LSF-HPC 83
83
84 Using LSF
84
Using LSF-HPC 85
85
86 Using LSF
86
Using LSF-HPC 87
87
88 Using LSF
88
Using LSF-HPC 89
89
92 Advanced Topics
92
94 Advanced Topics
94
Example Procedure 1
95
Example Procedure 2
95
Local Disks on Compute Nodes
96
Communication Between Nodes
97
Appendix A Examples
99
Submit the job:
100
View the job:
100
102 Examples
102
Show the environment:
103
Display the script:
103
Run the job:
103
Show the SLURM job ID:
104
Show the job allocation:
104
Exit the pseudo-terminal:
105
View the interactive jobs:
105
View the finished jobs:
105
View the node state:
105
View the running job:
106
View the finished job:
106
Glossary
109
110 Glossary
110
112 Glossary
112
116 Index
116
118 Index
118
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